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Board » General » SCT available at /sct but Home and Board links refer to root (/) with mod_python?

I have sct working with mod_python under /sct. I'm using Apache so I just added an Alias:

Alias /sct /var/www/sites/sct0.6/communitydraft


I also made the static files available via Apache and everything seems to work ok. Except the Home and Board links on the front page point to /wiki/show/Start instead of /sct/wiki/show/Start, for example. The login link correctly points to:

/sct/community/accounts/login/


Any ideas why this is?
Thanks
Looks like other links don't work either - for example if I go to:

/sct/fred


I get redirected to:

/wiki/show/Start/

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